Data science is an evolutionary extension of statistics capable of dealing with the massive amounts of data that are regularly produced today. It adds methods from computer science to the repertoire of statistics.
Data scientists who need to work with data for analysis, modeling, or forecasting should become familiar with NumPyâ€™s usage and its capabilities, as it will help them quickly prototype and test their ideas. This article aims to introduce you to some basic fundamental concepts of NumPy, such as:
Letâ€™s get started.
NumPy, short for Numerical Python, provides an efficient interface for storing and manipulating extensive data in the Python programming language. NumPy supplies functions you can call, which makes it especially useful for data manipulations. Later in this article, we will look into the methods and operations we can perform in NumPy.
In one way or another, a NumPy array is like Pythonâ€™s inbuilt list type, but NumPy arrays offer much more efficient storage and data operations as the dataset grows larger. NumPy offers a special kind of array that makes use of multidimensional arrays, called ndarrays, or N-dimensional arrays.
An array is a container or wrapper that has a collection of elements of the same type, and can be one or more dimensions. A NumPy array is also homogenous â€” i.e., it contains data of all the same data type.
As data scientists, the dimension of our array is essential to us, as it will enable us to know the structure of our dataset. NumPy has an inbuilt function for finding the dimension of the array.
A dimension of an array is a direction in which elements are arranged. It is similar to the concept of axes and could be equated to visualizing data in x-, y-, or z-axes etc., depending on the number of rows and columns we have in a dataset.
When we have one feature or column, the dimension is a one-dimensional array. It is 2D when we have two columns.
A vector is an array of one dimension. We have a single vector when our dataset is meant to take a single column of input and is expected to make predictions from it.
Data scientists constantly work with matrices and vectors; however, whenever we have many features in our dataset, and we end up using only one of the features for our model, the dimension of the feature has changed to one, which makes it a vector.
Below is a sample dataset. Our inputs/features are x1 and x2 while output/target is y.
If we selected the x1 feature for our model, then we have a vector of a one-dimensional array. But, if we have x1 and x2 features, then we have a matrix, or a 2-dimensional array.
python import numpy as np x1 = np.array([1,2,3,5,7,1,5,7]) x2 = np.array([5,3,2,1,1,6,3,1.2]) x1 print(x2)
A matrix is an array of two dimensions and above. As data scientists, we may encounter a state where we have a dataset with single input and single output columns. Therefore, our array has more than one dimension, and then it is called a matrix of x and y-axis. In this case, we say our array is n-dimensional.
This is a matrix of a 2D array, and here we have x- and y-axes.
1 | 2 | 3 | 4 | 5 |
4 | 3 | 4 | 3 | 4 |
This is a matrix of a 3D array with three axes: x, y, and z.
1 | 2 | 3 | 4 | 5 |
4 | 3 | 4 | 3 | 4 |
0 | 3 | 5 | 9 | 6 |
All ndarray elements are homogeneous â€” meaning they are of the same data type, so they use the same amount of computer memory. This leads us to the concept of type promotion and data types in NumPy.
Type promotion is a situation where NumPy converts any element from one data type to another.
In the diagram below, there is a mix of numbers in different data types, float
and int
. The result will give us the same number if they are in the Python list format.
1.2 | 2 | 3 | 4 | 5 |
If we had a Python list with int
and float
types, nothing would change here.
1.2 | 2 | 3 | 4 | 5 |
1.2 | 2 | 3 | 4 | 5 |
But unlike a Python list, a NumPy array interacts better with elements of the same type. Letâ€™s see how this plays out in practice.
NumPy promotes all the arrays to a floating-point number. This diagram is the result of converting the NumPy array to this data type.
1.2 | 2 | 3 | 4 | 5 |
1.2 | 2.0 | 3.0 | 4.0 | 5.0 |
In the code sample below, we created a Python list. Next, we shall make a NumPy array of this combination of two different types of elements â€” i.e., integers and floats.
python import numpy as np pythonList = [1,2,3,3.3] numpyArray = np.array(pythonList) print("all elements promoted to",numpyArray.dtype) Result; all elements promoted to float64
Using the dtype
function in NumPy, the type of elements in the array are promoted to float64
. It emphasizes that the NumPy array prioritizes floats above integers by converting the entire array of integers to floats.
The code sample below combines a list of integers with a list of strings and then promotes them all to Unicode string. It implies that the string has a higher priority over the integers.
python import numpy as np pythonList = [1,2,3,'t'] print(pythonList) numpyArray = np.array(pythonList) print(numpyArray.dtype) We get this result: [1, 2, 3, 't'] <U21
Understanding the concept of type promotion will guide us through what to do when we have type errors while working with NumPy. In the code sample below, we have a type error:
python
import numpy as np pythonList = [1,2,3,'t'] print(pythonList) numpyArray = np.array(pythonList) print(numpyArray + 2) UFuncTypeError: ufunc 'add' did not contain a loop with signature matching types (dtype('<U21'), dtype('<U21')) -> dtype('<U21')
Which means that, when elements are promoted to a Unicode string, we cannot perform any mathematical operations on them.
Before we get started, make sure you have a version of Python thatâ€™s at least â‰Ą 3.0, and have installed NumPy â‰Ą v1.8.
Working with NumPy entails importing the NumPy module before you start writing the code.
When we import NumPy as np
, we establish a link with NumPy. We are also shortening the word â€śnumpyâ€ť to â€śnpâ€ť to make our code easier to read and help avoid namespace issues.
python import numpy as np The above is the same as the below: python import numpy np = numpy del numpy
The standard NumPy import, under the alias np
, can also be named anything you want it to be.
The code snippet below depicts how to call NumPyâ€™s inbuilt method (array) on a Python list of integers to form a NumPy array object.
python import numpy as np pyList = [1,2,3,4,5] numpy_array = np.array(pyList) numpy_array
array
functionWe can import the array()
function from the NumPy library to create our arrays.
python â€‹â€‹from numpy import array arr = array([[1],[2],[3]]) arr
zeros
and ones
function to create NumPy arraysAs data scientists, we sometimes create arrays filled solely with 0 or 1. For instance, binary data is labeled with 0 and 1, we may need dummy datasets of one label.
In order to create these arrays, NumPy provides the functions np.zeros
and np.ones
. They both take in the same arguments, which includes just one required argument â€” the array shape. The functions also allow for manual casting using the dtype
keyword argument.
The code below shows example usages of np.zeros
and np.ones
.
python import numpy as nd zeros = nd.zeros(6) zeros
Change the type here:
python import numpy as np ones_array = np.ones(6, dtype = int) ones_array
We can alternative create a matrix of it:
python import numpy as np arr = np.ones(6, dtype = int).reshape(3,2) arr
In order to create an array filled with a specific number of ones, weâ€™ll use the ones
function.
python import numpy as np arr = np.ones(12, dtype = int) arr Matrix form python â€‹â€‹import numpy as np arr = np.ones(12, dtype = int).reshape(3,4) arr
We can as well perform a mathematical operation on the array:
This will fill our array with 3
s instead of 1
s:
python import numpy as np ones_array = np.ones(6, dtype = int) * 3 ones_array
dtype
attributeWhile exploring a dataset, it is part of the standard to familiarize yourself with the type of elements you have in each column. This will give us an overview of the dataset. To learn more about the usage of this attribute, check the documentation.
The dtype
attribute can show the type of elements in an array.
python import numpy as nd find_type1 = nd.array([2,3,5,3,3,1,2,0,3.4,3.3]) find_type2 = nd.array([[2,3,5],[3,5,4],[1,2,3],[0,3,3]]) print("first variable is of type", find_type1.dtype) print("second variable is of type", find_type2.dtype)
In order to have more control over the form of data we want to feed to our model, we can change the type of element in our dataset using the dtype
property.
However, while we can convert integers to floats, or vice versa, and integers or floats to complex numbers, and vice versa, we cannot convert any of the data types above to a string.
Using the dtype
function in NumPy enables us to convert the elements from floats to ints:
python import numpy as nd ones = nd.ones(6,dtype = int) ones Result; array([1, 1, 1, 1, 1, 1]) python import numpy as nd arr = nd.array([[2,3,5],[3,5,4],[1,2,3],[0,3,3]],dtype = float) print("the elements type is", arr.dtype)
type
and dtype
attributesThe type
belongs to Python. It unravels the type of Python data type we are working with. Visit the documentation for more on Python data types.
Using type
in the code sample below shows us that we have a special Python object, which is numpy.ndarray
. It is similar to how type("string")
works for Python strings; for example, the code sample below displays the type of the object.
python import numpy as np arrs = np.array([[2,4,6],[3,2,4],[6,4,2]]) type(arrs)
The dtype
property, on the other hand, is one of NumPyâ€™s inbuilt properties. As we explained earlier, NumPy has its own data types that are different from Python data types, so we can use the dtype
property to find out which NumPy data type we are working with.
Below, we shall use NumPyâ€™s dtype
property to find out which type of elements are in our NumPy array.
import numpy as np arrs = np.array([[2,4,6],[3,2,4],[6,4,2]]) arr.dtype
Any attempt to use the dtype
attribute on another non-NumPy Python object will give us an error.
python import numpy as np pyList =[ "Listtype",2] pyList.dtype Result; â€‹â€‹--------------------------------------------------------------------------- AttributeError Traceback (most recent call last) <ipython-input-19-2756eacf407c> in <module> 1 arr = "string type" ----> 2 arr.dtype AttributeError: 'list' object has no attribute 'dtype'
NumPy arrays are rich with a number of inbuilt functions. In this section, I will introduce you to the functions weâ€™d use most often while working on datasets:
The reshape
function will enable us to generate random data. It is not only good for rendering arrays to the columns and rows we want, but can also be helpful in converting a row to a column to row. This gives us the flexibility to manipulate our array the way we want it.
In the code snippet below, we have a vector, but we reshape it to a matrix, with an x-dimension and a y-dimension. The first argument in the reshape
function is the row
, and the second is the column
.
We can use reshape to render our array in the desired shape we want to achieve. This is one of the wonders of NumPy.
python import numpy as np a = np.arrange(12) matrix = a.reshape(3,4) print(matrix)
We can also turn a row into a column or a column into a row. This makes the NumPy array more flexible to use for data manipulation.
python import numpy as np a = np.arrange(12) vertical = a.reshape(12,1) print(vertical)
The code snippet below starts with a one-dimensional array of nine elements, but we reshape it to two dimensions, with three rows and three columns.
python import numpy as np one_d_array = np.array([2,3,4,5,6,7,8,9,10]) reshaped_array = one_d_array.reshape(3,3) reshaped_array
Just as reshaping data is common during data preprocessing, transposing data is also common. In some cases, we have data thatâ€™s supposed to be in a particular format, but receive some new data that is not in tandem with the data we have. This is where transposing the new data emerges to resolve the conflicting structure of our data.
We can just transpose the data using the np.transpose
function to convert it to the proper format that fits the required data.
python import numpy as np arr = np.arrange(12) arr = np.reshape(arr, (4, 3)) transposed_arr = np.transpose(arr) print((arr)) print('arr shape: {}'.format(arr.shape)) print((transposed_arr)) print('new transposed shape: {}'.format(transposed_arr.shape))
Transpose wouldnâ€™t work for a one-dimensional array:
import numpy as np arr = np.arrange(12) arr.ndim transposed_arr = np.transpose(arr) print((arr))
It is sometimes important to know the dimensions of our data during preprocessing. Performing mathematical operations on vectors and matrices with no similar dimensions will result in an error. For example, we can get an error from multiplying a 2D array by a 1D array.
If you donâ€™t know the dimensions of your data, you can use the ndim
attribute to find out.
python import numpy as np one_d_array = np.array([2,3,4,5,6,7,8,9,10]) reshaped_array = one_d_array.reshape(3,3) reshaped_array.ndim
Using different dimensions gave the error below, hence the importance of knowing the dimensions of our arrays.
python import numpy as np one_d_array = np.array([2,3,4,5,6,7,8,9,10]) reshaped_array = one_d_array.reshape(3,3) reshaped_array * one_d_array Result; â€‹â€‹ValueError: operands could not be broadcast together with shapes (3,3) (9,)
More specifically, you can use the shape
property to find the number of rows and columns in your array. Imbalances in the shapes can also give us errors when dealing with two different datasets. The code snippet shows how to find the shape of an array:
python import numpy as np one_d_array = np.array([2,3,4,5,6,7,8,9,10]) reshaped_array = one_d_array.reshape(3,3) reshaped_array.shape
arrange
and reshape
functionsWith NumPy, we can easily generate numbers and use reshape
functions to convert the numbers to any possible rows and columns we want. For example in the code sample below, the arrange
function generates a single row of 1
to 13
, while the reshape
function renders the array to three rows and four columns.
python import numpy as np matrix = np.arrange(1,13).reshape(3,4) matrix
Data scientists mostly work with vectors and matrices while trying to perform data mining. In order to avoid errors during the preprocessing stage, it is crucial we check our arraysâ€™ dimensions, shapes, and dtypes.
If we didnâ€™t, we would get errors if we tried to perform mathematical operations on these matrices and vectors when their sizes, dimensions, and shapes are not the same.
Checking the dtype
is to avoid type errors, as I explained in the previous section. But knowing each arrayâ€™s dimensions and shape safeguards us from getting value errors.
For an overview of data preprocessing, kindly check this HackerNoon post.
Below is an example of two-vector arithmetic:
python from numpy import array x1 = array([20,21,22,23,24]) x2 = array([21,23,2,2,3]) x1*x2
We can divide as well:
python from numpy import array x1 = array([20,21,22,23,24]) x2 = array([21,23,2,2,3]) x1/x2
Subtraction of two vectors looks like this:
python from numpy import array x1 = array([20,21,22,23,24]) x2 = array([21,23,2,2,3]) x1-x2
This is similar to performing any other mathematical operation, such as subtraction, division, and multiplication.
The addition of two vectors follows this pattern:
z = [z1,z2,z3,z4,z5] y = [y1,y2,y3,y4,y5] z + y = z1 + y1, z2 + y2, z3 + y3, z4 + y4, z5 + y5 python from numpy import array z = array([2,3,4,5,6]) y = array([1,2,3,4,5]) sum_vectors = z + y multiplication_vectors = z * y sum_vectors print(multiplication_vectors)
You can also perform mathematical operations on matrices:
import numpy as np arr = np.array([[1, 2], [3, 4]]) # Square root element values print('Square root', arr**0.5) # Add 1 to element values print('added one',arr + 1) # Subtract element values by 1.2 print(arr - 1.2) # Double element values print(arr * 2) # Halve element values print(arr / 2) # Integer division (half) print(arr // 2) # Square element values print(arr**2)
sum
function in NumPyIn the previous section on mathematical operations, we summed the values between two vectors. There are cases where we can also use the inbuilt function (np.sum) in NumPy to sum the values within a single array.
The code snippet below shows how to use np.sum
:
If the np.sum
axis is equal to 0
, the addition is done along the column; it switches to rows when the axis is equal to 1
. If the axis is not defined, the â€‹â€‹overall sum of the array is returned.
python â€‹â€‹import numpy as np sum = np.array([[3, 72, 3], [1, 7, -6], [-2, -9, 8]]) print(np.sum(sum)) print(np.sum(sum, axis=0)) print(np.sum(sum, axis=1)) Result; 77 [ 2 70 5] [78 2 -3]
NumPy is also useful to analyze data for its main characteristics and interesting trends. There are a few techniques in NumPy that allow us to quickly inspect data arrays. NumPy comes with some statistical functions, but weâ€™ll use the scikit-learn library â€” one of the core libraries for professional-level data analysis.
For example, we can obtain the minimum and maximum values of a NumPy array using its inbuilt min and max functions. This gives us an initial sense of the dataâ€™s range and can alert us to extreme outliers in the data.
The code below shows example usages of the min and max functions.
python import numpy as np arr = np.array([[0, 72, 3], [1, 3, -60], [-3, -2, 4]]) print(arr.min()) print(arr.max()) print(arr.min(axis=0)) print(arr.max(axis=-1)) Result; -60 72 [ -3 -2 -60] [72 3 4]
Data scientists tend to work on smaller datasets than machine learning engineers, and their main goal is to analyze the data and quickly extract usable results. Therefore, they focus more on the traditional data inference models found in scikit-learn, rather than deep neural networks.
The scikit-learn library includes tools for data preprocessing and data mining. It is imported in Python via the statement import sklearn
.
This computes the arithmetic mean along the specified axis:
mean(a[,axis,dtype,keepdims,where])
This finds the standard deviation in a dataset:
std(a[, axis, dtype, out, ddof, keepdims, where])
An index is the position of a value. Indexing is aimed at getting a specific value in the array by referring to its index or position. In data science, we make use of indexing a lot because it allows us to select an element from an array, a single row/column, etc.
While working with an array, we may need to locate a specific row or column from the array. Letâ€™s see how indexing works in NumPy.
The first position index is denoted as 0 which represents the first row.
python import numpy as np matrix = np.arrange(1,13).reshape(3,4) matrix[0] Now, let's try getting the third row from the array. python import numpy as np matrix[2]
The below gives us a vector from the last row.
python import numpy as np matrix[-1]
Every element, row, and column have an array index position numbering from 0
. It can also be a selection of one or more elements from a vector.
This is as simple as trying to filter a column or rows from a matrix. For example, we can select a single value from several values in the below example. The values are numbered sequentially in the index memory, starting from zero.
index | 0 | 1 | 2 | 3 |
value | 2 | 4 | 5 | 10 |
For instance, getting a value at index 0 will give us 2, which is a scalar.
python import numpy as np value = np.array([2,4,5,10]) value[0]
A matrix is more like an array of vectors. A single row or column is referred to as a vector, but when there is more than one row, we have a matrix.
We are getting the position of vectors in the matrix below using square brackets.
vector[0] | 1 | 2 | 3 |
vector[1] | 4 | 5 | 6 |
vector[2] | 7 | 8 | 9 |
vector[3] | 10 | 11 | 12 |
vector[0] => [1,2,3] vector[1] => [4,5,6] vector[2] => [7,8,9] vector[3] => [10,11,12]
Getting an element of vector[0]
is done by adding the index of the element.
vector[0,0] => 1 vector[0,1] => 2 vector[0,2] => 3
This gives us a scalar or element of the second position in the third row.
python import numpy as np matrix[2,1]
This selects the first column:
python import numpy as np matrix[:,0]
Select the second column:
python import numpy as np matrix[:,1]
This gets the last column:
python import numpy as np matrix[:,-1]
In this article, we learned about the fundamentals of NumPy with essential functions for manipulating NumPy arrays. I hope this helps you gain a basic understanding of Python on your path to becoming a data scientist.
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One Reply to "Introduction to data science with NumPy"
Great piece of content to refresh the basic of data science with numpy.